R中报错Error in `ggsignif::geom_signif()`:! Problem while computing stat.ℹ Error occurred in the 2nd
最新推荐文章于 2023-11-23 10:36:10 发布
最新推荐文章于 2023-11-23 10:36:10 发布
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p=ggplot(umap)+geom_violin(aes(x=recur_T_NT,y=PHF14,fill=recur_T_NT))
p+ stat_compare_means(comparisons = list(c("NR_NT","NR_T"),c("NR_NT","R_NT"),c("NR_T","R_T"),c("R_NT","R_T")),family = "TT Times New Roman",method = "wilcox.test",label = "p.signif",#标记p值的方法
label.x = 1.5#调整p值所在位置
)
[1] FALSE
Error in `ggsignif::geom_signif()`:
! Problem while computing stat.
ℹ Error occurred in the 2nd layer.
Caused by error in `setup_params()`:
! Can only handle data with groups that are plotted on the x-axis
报错原因:发现映射关系被我写在了geom_violin()里面,因此stat_compare_means()无法读取数据,正确的写法应该如下
p=ggplot(umap,aes(x=recur_T_NT,y=PHF14,fill=recur_T_NT))+geom_violin()
p+ stat_compare_means(comparisons = list(c("NR_NT","NR_T"),c("NR_NT","R_NT"),c("NR_T","R_T"),c("R_NT","R_T")),family = "TT Times New Roman",method = "wilcox.test",label = "p.signif",#标记p值的方法
label.x = 1.5#调整p值所在位置
)
参考
ggsignif报错:Can only handle data with groups that are plotted on the x-axis-CSDN博客
Error
in
`
geom
_sf
()
`
:
!
Problem
while
computing
stat
.
ℹ
Error
occurred
in
the
1st
layer
.
Caused by
error
in
`
compute_
layer
()
`
:
!
`
stat
_sf
()
`
requires
the
follow
in
g miss
in
g aes
the
tics
:
geom
etry
.
Run
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rlang
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:
last_trace
()
`
to see where
the
error
occurred
.
Error
in
`
geom
_smooth
()
`
:
!
Problem
while
computing
stat
.
ℹ
Error
occurred
in
the
2
nd
layer
.
Caused by
error
in
`
compute_
layer
()
`
:
!
`
stat
_smooth
()
`
requires
the
follow
in
g miss
in
g aes
the
tics
:
y
Run
`
rlang
:
:
last_trace
()
`
to see where
the
error
occurred
.
Error
in
`
geom
_density
()
`
:
!
Problem
while
computing
aes
the
tics
.
ℹ
Error
occurred
in
the
1st
layer
.
Caused by
error
:
!
找不到对象'CPM'
in
`
geom
_density
()
`
:
!
Problem
while
computing
aes
the
tics
.
ℹ
Error
occurred
in
the
1st
layer
.
Caused by
error
:
!
找不到对象'variable'
R中函数enrichKEGG报错Error in download.KEGG.Path(species) :‘species‘ should be one of organisms listed in
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